Publications

This list contains some of our scientific publications over the past few years. For a more complete list, see Johannes Textor's Google Scholar profile.

• Gijs Schröder, Johannes Textor:
  Classifier Systems as Linear Probability Models.
  Proceedings of the Genetic and Evolutionary Computation Conference, GECCO 2025, NH Malaga Hotel, Malaga, Spain, July 14-18, 2025 : 167-175, 2025. doi: 10.1145/3712256.3726453
• Ankur Ankan, Johannes Textor:
  Expert-In-The-Loop Causal Discovery: Iterative Model Refinement Using Expert Knowledge.
  Conference on Uncertainty in Artificial Intelligence, Rio Othon Palace, Rio de Janeiro, Brazil, 21-25 July 2025 286: 172-183, 2025. doi:
• Ankur Ankan, Johannes Textor:
  pgmpy: A Python Toolkit for Bayesian Networks.
  Journal of Machine Learning Research 25(265): 1-8, 2024. doi: 10.48550/arXiv.2304.08639
• Evgenia Martynova, Johannes Textor:
  A Uniformly Bounded Correlation Function for Spatial Point Patterns.
  Proceedings of the 30th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, KDD 2024, Barcelona, Spain, August 25-29, 2024 : 2177-2188, 2024. doi: 10.1145/3637528.3671891
• Jeroen H. A. Creemers, Ankur Ankan, Kit C. B. Roes, Gijs Schröder, Niven Mehra, Carl G. Figdor, I. Jolanda M. Vries, Johannes Textor:
  In silico cancer immunotherapy trials uncover the consequences of therapy-specific response patterns for clinical trial design and outcome.
  Nature Communications 14(1), 2023. doi: 10.1038/s41467-023-37933-8
• Inge M. N. Wortel, Johannes Textor:
  Interpreting T-cell search “strategies” in the light of evolution under constraints.
  PLOS Computational Biology 19(2): e1010918, 2023. doi: 10.1371/journal.pcbi.1010918
• Inge M. N. Wortel, Seonyoung Kim, Annie Y Liu, Enid C Ibarra, Mark J Miller:
  Listeria motility increases the efficiency of epithelial invasion during intestinal infection.
  PLOS Pathogens 18(12): e1011028, 2022. doi: 10.1371/journal.ppat.1011028
• Jeroen H A Creemers, W Joost Lesterhuis, Niven Mehra, Winald R Gerritsen, Carl G Figdor, I Jolanda M Vries, Johannes Textor:
  A tipping point in cancer-immune dynamics leads to divergent immunotherapy responses and hampers biomarker discovery.
  Journal for ImmunoTherapy of Cancer 9(5): e002032, 2021. doi: 10.1136/jitc-2020-002032
• Jeroen H. A. Creemers, Maarten J. Doelen, Sandra Wilpe, Rick Hermsen, Tjitske Duiveman-Boer, Diederik M. Somford, Marcel J. R. Janssen, J. P. Michiel Sedelaar, Niven Mehra, Johannes Textor, Harm Westdorp:
  Immunophenotyping Reveals Longitudinal Changes in Circulating Immune Cells During Radium-223 Therapy in Patients With Metastatic Castration-Resistant Prostate Cancer.
  Frontiers in Oncology 11, 2021. doi: 10.3389/fonc.2021.667658
• Inge M N Wortel, Johannes Textor:
  Artistoo, a library to build, share, and explore simulations of cells and tissues in the web browser.
  eLife 10, 2021. doi: 10.7554/elife.61288
• Ankur Ankan, Inge M. N. Wortel, Johannes Textor:
  Testing Graphical Causal Models Using the R Package “dagitty”.
  Current Protocols 1(2), 2021. doi: 10.1002/cpz1.45
• Inge M. N. Wortel, Can Keşmir, Rob J. Boer, Judith N. Mandl, Johannes Textor:
  Is T Cell Negative Selection a Learning Algorithm?
  Cells 9(3): 690, 2020. doi: 10.3390/cells9030690
• Nicolas Levernier, Johannes Textor, Olivier Bénichou, Raphaël Voituriez:
  Inverse Square Lévy Walks are not Optimal Search Strategies for d >= 2.
  Physical Review Letters 124(8), 2020. doi: 10.1103/physrevlett.124.080601
• Jasper J.P. Beek, Georgina Flórez-Grau, Mark A.J. Gorris, Till S.M. Mathan, Gerty Schreibelt, Kalijn F. Bol, Johannes Textor, I. Jolanda M. Vries:
  Human pDCs Are Superior to cDC2s in Attracting Cytolytic Lymphocytes in Melanoma Patients Receiving DC Vaccination.
  Cell Reports 30(4): 1027-1038.e4, 2020. doi: 10.1016/j.celrep.2019.12.096
• Benny Chain, Victor Greiff, Johannes Textor, Gur Yaari:
  Editorial: Methods and Applications of Computational Immunology.
  Frontiers in Immunology 10, 2019. doi: 10.3389/fimmu.2019.02818
• Kasper M. W. Soekarjo, Johannes Textor, Rob J. Boer:
  Local Attachment Explains Small World–like Properties of Fibroblastic Reticular Cell Networks in Lymph Nodes.
  The Journal of Immunology 202(11): 3318-3325, 2019. doi: 10.4049/jimmunol.1801016
• Benito Zander, Maciej Liśkiewicz, Johannes Textor:
  Separators and adjustment sets in causal graphs: Complete criteria and an algorithmic framework.
  Artificial Intelligence 270: 1-40, 2019. doi: 10.1016/j.artint.2018.12.006
• Erinke Grinsven, Johannes Textor, Lucie S. P. Hustin, Katarina Wolf, Leo Koenderman, Nienke Vrisekoop:
  Immature Neutrophils Released in Acute Inflammation Exhibit Efficient Migration despite Incomplete Segmentation of the Nucleus.
  The Journal of Immunology 202(1): 207-217, 2019. doi: 10.4049/jimmunol.1801255